Refinancing can be stressful for self-employed borrowers, especially when lenders ask for additional documentation to prove income stability and business ownership. One of the most common requests during a mortgage refinance, particularly for small business owners, LLC members, and independent contractors, is a CPA comfort letter for mortgage refinance.
While not every lender asks for the letter, those who do rely on it to confirm that the borrower’s business exists, operates legitimately, and generates the income used to qualify for the new loan. This article explains why lenders request these letters, what CPAs can and cannot verify, and how LLCs and small business owners can prepare.
Why Lenders Request a CPA Comfort Letter During Refinance
Mortgage refinance guidelines fall under a mix of federal rules, agency requirements, and internal lender policies. Borrowers who earn W-2 wages rarely face extra verification, but self-employed borrowers often do. Lenders work under obligations such as:
- Ability-to-Repay (ATR) Rule
- Qualified Mortgage (QM) standards
- FHFA requirements for Fannie Mae and Freddie Mac loans
- AUS (Automated Underwriting Systems) findings such as DU or LPA
- Internal overlays from portfolio lenders or Non-QM refinance programs
When tax returns or financial statements leave questions about income consistency, stability, or business structure, underwriters may request a CPA comfort letter to ensure the borrower is a legitimate business owner with verifiable operations.
What a CPA Comfort Letter for Mortgage Refinance Can Actually Verify
A CPA comfort letter is not an audit and does not guarantee income performance. Instead, it provides factual verification based on documents the CPA already has on file.
Typical Verifications a CPA Can Provide
- Confirmation of business ownership, including percentage ownership
- Entity type: LLC, S-Corporation, C-Corporation, Partnership, or Sole Proprietorship
- Status of business operations (active, open, in good standing)
- Years in business
- Whether the CPA prepared or reviewed:
- Tax Returns (1040, 1120, 1120-S, 1065)
- IRS Tax Transcripts
- Profit & Loss (P&L) Statements
- Balance Sheets
- General Ledger from QuickBooks, Xero, FreshBooks
- Bookkeeping Records, invoices, receipts
- Merchant processing reports (PayPal, Stripe, Square)
- E-commerce statements (Amazon, Shopify, Etsy)
- Ad revenue statements such as CPC, CPM, CPA payouts
These verifications help lenders validate that the income supporting the refinance application is reasonably grounded in accurate record-keeping and legitimate business activity.
What a CPA CANNOT State in the Letter
CPAs must comply with:
- AICPA Code of Professional Conduct
- Third-Party Verification Guidelines
- Non-Assurance Reporting Standards
- Federal and State Board of Accountancy rules
- Audit / Review / Compilation Standards
Because of these rules, the CPA cannot:
- Guarantee future income
- Predict business sustainability
- Confirm the borrower’s ability to repay
- Provide assurance that replaces underwriting
- Certify that financial statements are audited when they are not
This protects both the CPA and the lender from misleading or overstated claims.
When LLC Owners and Small Business Borrowers Are Most Likely to Need a CPA Letter
When Income Is Complex or Irregular
Owners who receive multi-layered income, such as distributions, draws, K-1 allocations, or mixed 1099 revenue, often trigger extra lender scrutiny.
When the Business Structure Has Recently Changed
- LLC becoming an S-Corp
- New partners added
- Change in ownership percentage
- Recent incorporation
A CPA comfort letter for business ownership helps clarify these updates.
When Automated Underwriting Systems Flag the File
Both Desktop Underwriter (DU) and Loan Product Advisor (LPA) sometimes request third-party business verification.
When Refinance Is Through a Portfolio or Non-QM Program
These lenders may require additional documentation because they hold more of the risk.
Types of Refinance Programs That May Request a CPA Letter
Conventional Mortgage Refinance (Fannie Mae and Freddie Mac)
- DU/LPA findings may require a verification of self-employment
- Lenders may want confirmation of business ownership and operating status
FHA Streamline Refinance
Generally minimal documentation, but a CPA letter may be requested if income source verification is unclear.
VA IRRRL (Interest Rate Reduction Refinance Loan)
Rarely requires a CPA letter, unless residual income depends on self-employment records.
USDA Streamlined Assist Refinance
May request confirmation of business activity if tax returns show unusual income fluctuations.
Non-QM and Portfolio Lender Refinances
Most likely to request a CPA comfort letter because these programs rely heavily on bank statements, P&Ls, and self-employment verification.
Documents Borrowers Should Prepare Before Requesting a CPA Letter
Financial Documents
- Two years of business and personal tax returns
- IRS transcripts
- Year-to-date P&L and Balance Sheet
- Business and personal bank statements
- General Ledger (QuickBooks, Xero)
- Invoices, receipts, merchant statements
- E-commerce revenue reports
Business Structure Documentation
- Articles of Incorporation / Organization
- Operating Agreement (LLCs)
- Partnership Agreement
- S-Corp election (Form 2553)
- EIN confirmation letter from the IRS
Example Structure of a Mortgage Refinance CPA Comfort Letter
Key Elements
- Accounting firm letterhead
- CPA’s licensing details
- Business ownership verification
- Confirmation of entity type
- Statement of years in business
- Documents reviewed
- AICPA-compliant disclaimer language
- Signature and date
This structure maintains lender compliance without violating AICPA standards.
How to Request the Letter From a CPA Without Delays
Tips for Borrowers
- Ask early, preferably during pre-underwriting.
- Provide all financial documents beforehand.
- Clarify exact wording your lender requires.
- Ensure your CPA understands it is for a mortgage refinance.
Tips for CPAs
- Stay within AICPA verification guidelines.
- Document the basis of all statements provided.
- Include appropriate disclaimers.
- Avoid forward-looking income statements.
